PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024529-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 348aa    MW: 39045.9 Da    PI: 6.676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024529-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11175221455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A+ Y+k+Lq
  WALNUT_00024529-RA 175 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAITYVKELQ 221
                         699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16175233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.90E-12176224No hitNo description
SMARTSM003533.9E-13177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEISSTKWLS ELEMDDFEYI QQCDMNTLDD GFATAMRENF QQSLSSESHS SYPAFNTKTT  60
ITTNTFSNSS ISQNSFERPA KQTKTNNWNS GIAEHGSIPK PSSSSHILSF WNSNSLPADS  120
KQFFRTLDSS LKPKDEVVCQ VNKHVHLISK GSAENQDHGT QKTNSMTRTP SNAQDHIMAE  180
RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAITYVKEL QARVNLLEEQ TKKRTVESFV  240
YVKKAQLSAD DDTSSCDENF HGRSDEAALP EIEARISEKD VLIRIHCEKN KGAVVRTLCE  300
IEKLHLSVVN SSVLPFGNSI LDMTVIARMD NEFDLTAKDI VKCLRLAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184ERKRRE
2180185RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236876.11e-139PREDICTED: transcription factor bHLH18-like
TrEMBLM5WBF91e-138M5WBF9_PRUPE; Uncharacterized protein
STRINGPOPTR_0007s14480.18e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-73bHLH family protein